Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDIKAEIQKLAKEIGISKIGFTTADNFDYLEKSLRASVEEGRNSGFEHKVIEDRIYPERLLESAKTIISIGVAYPHKLPQQPQKTSYKRGKITPNSWGLDYHYVVGEKLDRLSKGIEELCRDFPLQQKAMVDTGALVDTAVAQRAGIGFIGKNGLVISKEYGSYMFLGELITNLEIEPDKPVDYD----CGDCRRCLDACPTSCL-IGDGSM---------NAKRCLSFQ-TQDKGMMDIEFRKKIKTVIYGCDICQICCPYNKGINNPLATEIDPELAQPELIPFLSLSNGQFKEKFGMIAGSWRGKNILQRNAIIALANAHDKTAVVKLIEIIDKNNNPIHTATAIWALGEIVKKPNDEILEFMSNLTLKDEDSRKELELIRHKWQF |
| 4RAS Chain:A ((492-572)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTTDLPMSVDRPIDFGLQDFCNQCRKCARECPCNAISFGDKVMFNGYEIWKADVEKCTKYRVTQMKG--------------SACGRCMKMCPWNREDTVEGRRLAELSIKVPEARAAIIAMDDALQNGKRNLIKRWWFDLEVIDGVAGAPRMGTNERDLSPDRGDKIGANQKLAMYPPRLQPPPGTTLDAVLPVDRSGGLAEYAAAETPAAARARLKSSA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RAS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17030 for 288 contacts (-59.1/contact) +
2D Compatibility (PS) -6544 + (NN) -151 + (LL) 12636
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -17089.0 ( -59.34 by residue)
QMean score : 0.394
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