Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEIAVLIIAIAFVVLVLGILFVLKKVSETIEETKQTIKVLTSDVNVTLYQTNEILAKANVLVDDVNGKVSTIDPLFVAIADLSESVSDLNLQA--RHIGQKASSATSSVTKAGSALAIG---------KAASKIFRKKGDKK
4C5N Chain:A ((83-168))
---------------------------------------------------TEEIIKRAGEVYEASNAQYFVVDPVM---------LNPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHV
General information:
TITO was launched using:
RESULT:
Template:
4C5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5903 for 395 contacts (14.9/contact) +
2D Compatibility (PS) -7273 + (NN) -3095 + (LL) 7208
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -1907.0 ( -4.83 by residue)
QMean score : 0.276
(partial model without unconserved sides chains):
PDB file :
Tito_4C5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C5N-query.scw
PDB file :
Tito_Scwrl_4C5N.pdb
: