Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILS--NFPDQKITMIEHDSYYKDQSHLTFEERVKT-----NYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
1UDW Chain:A ((21-232))
---EPFLIGVSGGTASGKSSVCAKIVQLL---QKQVVILSQDSFYR---VLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILN---
General information:
TITO was launched using:
RESULT:
Template:
1UDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85854 for 1532 contacts (-56.0/contact) +
2D Compatibility (PS) -21218 + (NN) -6212 + (LL) 612
1D Compatibility (HY) -22000 + (ID) 4600
Total energy: -139272.0 ( -90.91 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1UDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDW-query.scw
PDB file :
Tito_Scwrl_1UDW.pdb
: