Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
4IFT Chain:A ((16-266))
--YNGYLIDLDGTMYRGTERIDAASGFIKELNRLHIPYLFVTNNSTRTPEQVADKLVSLDIPATPEQIFTSSMATANYVYDLDQNAMIYFIGEEGLYKALKEKGFSFADENADVVIVGLDREVTYEKLAVACLAVRNGAKLISTNGDLVLPTERGLMPGNGAFTALISHSTQVKATFVGKPEPIIMEQALKVLGTNKNETIMVGDNYDTDILAGIRAGLDTLLVHTGVTTVEKLKEYKQQPTYSMKSLDDWKFL--
General information:
TITO was launched using:
RESULT:
Template:
4IFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161539 for 2147 contacts (-75.2/contact) +
2D Compatibility (PS) -27880 + (NN) -12356 + (LL) 376
1D Compatibility (HY) -27600 + (ID) 6400
Total energy: -235399.0 ( -109.64 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_4IFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IFT-query.scw
PDB file :
Tito_Scwrl_4IFT.pdb
: