Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKKLHGFFNFVRWLLVVLLIIVGLALVFNKPIRNAFIAHQSNHYQISRVSKKTIEKNKKSKTSYDFSSVKSISTESILSAQTKSHNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGQNNYALASHHVFGLTGSSKMLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTD-PEATERIIVHAELEKTGEFSTADESILKAFSKKYNQINL
2KW8 Chain:A ((79-203))
-------------------------------------------------------------------------------------------VIGRISIPSVSLELPVLKSSTEKNLLSGAATVKENQVMG-KGNYALAGHNM----SKKGVLFSDIASLKKGDKIYLYDNENEYEYAVTGVSEVTPDKWEVVEDH-GKDEITLITCVSVKDNSKRYVVAGDLVGTKAKK-------------------
General information:
TITO was launched using:
RESULT:
Template:
2KW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81719 for 914 contacts (-89.4/contact) +
2D Compatibility (PS) -13256 + (NN) -4156 + (LL) 8084
1D Compatibility (HY) -14000 + (ID) 2750
Total energy: -107797.0 ( -117.94 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_2KW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KW8-query.scw
PDB file :
Tito_Scwrl_2KW8.pdb
: