Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAGQYYRPSAPELRKDREVALKNMQAFNN--EDNSSKRNVILQKWFG--ATGKSIHMEQRFVCDYGCNIYVGENFYANFNQTFLDVCEIRIGDNCMFGPNCQLLTPLHPLDPIERNSGLEYGAPIQIGNNVWLGGGVTILPGVVLGDNVVVGAGSVVTKSFENNVVIAGNPAKIIKKLA
3HJJ Chain:A ((6-188))
-TEKDKMLAGEMYIADDEELVADRVEAKRLTRLYNEAVETGDERRFTLLNQLLGSSADGKA-QINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTIE
General information:
TITO was launched using:
RESULT:
Template:
3HJJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123965 for 1410 contacts (-87.9/contact) +
2D Compatibility (PS) -20129 + (NN) -10968 + (LL) 412
1D Compatibility (HY) -16800 + (ID) 4800
Total energy: -176250.0 ( -125.00 by residue)
QMean score : 0.653
(partial model without unconserved sides chains):
PDB file :
Tito_3HJJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HJJ-query.scw
PDB file :
Tito_Scwrl_3HJJ.pdb
: