Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQSNHRYHGPLIEFEIEYSYIKIFPWIGLFISCIGLYASNFGDPLGFIKFIFSVCIFVNLVSIIISLFLKKYLIF
2L8S Chain:A ((33-40))
-----------------------------------------------------------------IGFFKRPLKKK
General information:
TITO was launched using:
RESULT:
Template:
2L8S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1471 for 20 contacts (-73.5/contact) +
2D Compatibility (PS) -700 + (NN) 1636 + (LL) 4996
1D Compatibility (HY) -1200 + (ID) 100
Total energy: 3161.0 ( 158.05 by residue)
QMean score : 0.094
(partial model without unconserved sides chains):
PDB file :
Tito_2L8S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L8S-query.scw
PDB file :
Tito_Scwrl_2L8S.pdb
: