Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNQEKMEKAIYQFLEALGENPDREGLKDTPKRVAKMYIEMFSGLNQDPKEQFT-AVFSENHEEVVIVKDIPFYSMCEHHLVPFYGKAHIAYLPNDGRVTGLSKLARAFEVASKRPQLQERLTAQVAQALEDALAPKGIFVMIEAEHMCMTMRGIKKPGSKTITTVARGLYKDDRYERQEILSLIQKG
1WM9 Chain:A ((36-216))
----ERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFPAEGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIP-DGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHLR--
General information:
TITO was launched using:
RESULT:
Template:
1WM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82930 for 1354 contacts (-61.2/contact) +
2D Compatibility (PS) -20135 + (NN) -11013 + (LL) -80
1D Compatibility (HY) -17600 + (ID) 3950
Total energy: -135708.0 ( -100.23 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1WM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WM9-query.scw
PDB file :
Tito_Scwrl_1WM9.pdb
: