Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIKYILSFENIIAIFFIVLFGLLLIRIEPVNNSVYSIISGIAIDKVIIVIISSFVIAIFSAFFIIDILEIIFHLKIDSLFLIAYLFFAISLGFGLLKVLTESQFSLLSAFIAFPLFLIFPKLFEKIVNNRKINQKDNKNQK
1OED Chain:E ((446-467))
-----------------------------------------------------------------------------VIDKACFWIALLLFSIGTLAIF---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10357 for 91 contacts (-113.8/contact) +
2D Compatibility (PS) -2316 + (NN) -1578 + (LL) 12712
1D Compatibility (HY) -2400 + (ID) 150
Total energy: -4089.0 ( -44.93 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1OED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OED-query.scw
PDB file :
Tito_Scwrl_1OED.pdb
: