Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSYFRNYWYRFGAILFIILAVILLVFRPDWSMLHYLLYFNFMALLAHQFEEYQFPGGASPIINYVVYDEEELMDRFPGNTQSIMLVNTIAWLLYIASIAFPQAYWLGLGVMFFSLTQLLGHGFQMNIKLKTWYNPGLATTVFLLVPIACAYIYQASAEGMLTWGDWLGGFIMLIVCVLTSIIAPVQLLKDKKTNYIISPWQMDRFHKVINFVRIKK |
1MS4 Chain:A ((156-201)) | -------------------------------------------------------------------------------------------------------------------------------------------------PVSLKEFFPAEMEGMHT-NQFLGGAGVAIVASNGNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRSA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -13969 for 194 contacts (-72.0/contact) +
2D Compatibility (PS) -4980 + (NN) 527 + (LL) 13212
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -8010.0 ( -41.29 by residue)
QMean score : -0.394
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