Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSHIKAENIIVSYDQKEII----NNLSLSILNQKITTIIGANGCGKSTLLKALTRIHKIKDGTITIDGHDIAHLPTKEIAK----KIALLPQVLEATEGITVYELISYGRFPH-QKYLGNLTNDDRSKIHWAMEMTNVAQ----FANRDVDDLSGGQRQKVWIAMALAQDTDTIFLDEPTTYLDMNHQLEVLELLKKLNNETQKTIIMVLHDLNLSARYSDYLVAMKTGKIIYEGSPSQIMTKDIIKDIFKIDAHIIQDPISKQPVLLSYQLSTDQN
1L2T Chain:A ((2-226))
---IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE---LPLIFKYRGAMSGEERRK--RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEKLR---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146281 for 1661 contacts (-88.1/contact) +
2D Compatibility (PS) -23448 + (NN) -10521 + (LL) 3188
1D Compatibility (HY) -12800 + (ID) 3850
Total energy: -193712.0 ( -116.62 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: