Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEDIKKQVRRAFDFRMAIRVYNNNDIPKEDMEYILDTAWLSPSSVGLEGWRFLVLDRQTI-AKFRDKLKEVAWGAQYQLDTASHFVLLLAEKGAYYNADSMINSLVRRGLGDPAALE-SRIPLYKSFQENDMKIDSERSLWDWTAKQTYIALGNMMTAAAMIGVDSCPIEGFDYEKVNNILSKEGLIDDKKEAISCMVSFGYRLREPKH------SRARKERQEVITWVE
1VFR Chain:A ((24-216))
---------------------------VSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKACSH-VILFANKLSYTRDD--YDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFA------DELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL-
General information:
TITO was launched using:
RESULT:
Template:
1VFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66210 for 1297 contacts (-51.0/contact) +
2D Compatibility (PS) -19415 + (NN) -3007 + (LL) 3020
1D Compatibility (HY) -13200 + (ID) 2500
Total energy: -101312.0 ( -78.11 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1VFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFR-query.scw
PDB file :
Tito_Scwrl_1VFR.pdb
: