Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
4TTR Chain:A ((15-200))
MVYSVGLTGNIASGKSTVAEFFSELGINVIYADKIAKELTSKNTPCYQDIISHFGSSVVLNNGELDRKRIRDIIFSNSNERLWLESLLHPVIRKKI--EEQLIVCTSPYCLIEIPLLFNKHHYPYLQKVLLVIAPLESQLDRIVKRDHCTKKQALAILATQPNLEQRLEAADDVLINESGLSELKAKVNKLHQKY
General information:
TITO was launched using:
RESULT:
Template:
4TTR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75224 for 1322 contacts (-56.9/contact) +
2D Compatibility (PS) -20536 + (NN) -9749 + (LL) 200
1D Compatibility (HY) -18000 + (ID) 2800
Total energy: -126109.0 ( -95.39 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4TTR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TTR-query.scw
PDB file :
Tito_Scwrl_4TTR.pdb
: