Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIAETFSIILDRINQ
4GSY Chain:A ((4-199))
-----FITFEGPEGSGKTTVINEVYHRLVKDY--DVIMTREPGGVPTGEEIRKIVLE--GNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII----------DQEDLKFHEKVIEGYQEIIH---QRFKSVNADQPLENVVEDTYQTIIKYLEK
General information:
TITO was launched using:
RESULT:
Template:
4GSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73195 for 1455 contacts (-50.3/contact) +
2D Compatibility (PS) -20253 + (NN) -12297 + (LL) 1564
1D Compatibility (HY) -18800 + (ID) 4500
Total energy: -127481.0 ( -87.62 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4GSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GSY-query.scw
PDB file :
Tito_Scwrl_4GSY.pdb
: