Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVKDFMTKK--LVYVSPDTTVAEAADLLREHHLRRLPVVE-NDQLLGLVTE-------GTMAEAQPSK---ATSLSIYEMNYLLNKTK---IRDIMIKDIVTVSQYASLEDAIYLMMSRKIGVLPVVD-NGQLYGIITDRDVFKAFLEIAGYGQEGYRLVILADEGIGVLSKVLNRLSSANLSVKRLVIIERKAGKKAVEIQLEGYADKDVLKQELVFDDVIVETLEKTVKKPLS
4GQY Chain:A ((6-157))
--VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISG------DVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKR------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89041 for 865 contacts (-102.9/contact) +
2D Compatibility (PS) -13836 + (NN) -6365 + (LL) 7216
1D Compatibility (HY) -12000 + (ID) 2450
Total energy: -116476.0 ( -134.65 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_4GQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GQY-query.scw
PDB file :
Tito_Scwrl_4GQY.pdb
: