Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKSTNSGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPL-VGKLDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLS-QEINVERIVL
2JFW Chain:A ((24-288))
-DNRPIGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVALEEIKAALSIPVIGVILPGTRAAVKKTQNKQVGIIGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQNVMGENVQLIDSGAETVGEVSMLLDYFNLSNSPQNGRTLCQFYTTGSAKLFEEIAEDWLGIGHLNVEHIEL
General information:
TITO was launched using:
RESULT:
Template:
2JFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -244438 for 2368 contacts (-103.2/contact) +
2D Compatibility (PS) -28217 + (NN) -7913 + (LL) 208
1D Compatibility (HY) -32400 + (ID) 8200
Total energy: -320960.0 ( -135.54 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_2JFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFW-query.scw
PDB file :
Tito_Scwrl_2JFW.pdb
: