Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRIQKNILREFEMESSEQALAIWSVLSDVYDKSPWSLSQISEDLKKDSTDYFFVYNDGEVIGFLA------------LQQLVGEVEITNIAVKKNYQGKGYAYQLM-----SMIADIEVP-VFLEVRYSNIVAQKLYERCGFVVLGKRKNYYHDPIEGAIVMRKG
4R3L Chain:A ((44-165))
------------------------------------------EHLKEYGLAFFVAIVDNSVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYEKLNFKKVKVLKGYYADGEDAYLMARPL
General information:
TITO was launched using:
RESULT:
Template:
4R3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66307 for 641 contacts (-103.4/contact) +
2D Compatibility (PS) -11349 + (NN) -3280 + (LL) 3716
1D Compatibility (HY) -10400 + (ID) 1850
Total energy: -89470.0 ( -139.58 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_4R3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R3L-query.scw
PDB file :
Tito_Scwrl_4R3L.pdb
: