Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKMKTTKGGYTTTLADKIISQKQPIYSLSTELEPQQRFEEGKPTGEIVAYKAWFV---QEGQDPFQVKFEETIELP--AFQSMIQFDTLQACEVKY--------NIYFKANGIKEVR
2K5D Chain:A ((28-106))
-----------------------------------VRIQNEDGSVSDEIKERTYDLKSKGQGR--MIQVSIPASVPLKEFDYNARVELINPIADTVATATYQGADVDWYIKADDIVLTL
General information:
TITO was launched using:
RESULT:
Template:
2K5D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15435 for 354 contacts (-43.6/contact) +
2D Compatibility (PS) -6996 + (NN) 295 + (LL) 2640
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -22596.0 ( -63.83 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_2K5D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K5D-query.scw
PDB file :
Tito_Scwrl_2K5D.pdb
: