Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHARQNEWPIIY--------------INDHYGLWQADIKNIQQECTNERSKDIITKIAPVDADYFLIKPKHSAFYETALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFALTMMENVLFAEITTEEQIIEK
2FQ1 Chain:A ((34-207))
------ALLIHDMQDYFVSFWGEN-CPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWG---------PGLTRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEE-----
General information:
TITO was launched using:
RESULT:
Template:
2FQ1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136098 for 1228 contacts (-110.8/contact) +
2D Compatibility (PS) -17123 + (NN) -5103 + (LL) 2160
1D Compatibility (HY) -10400 + (ID) 2300
Total energy: -168864.0 ( -137.51 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_2FQ1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FQ1-query.scw
PDB file :
Tito_Scwrl_2FQ1.pdb
: