Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAEVLYELKVAEAKYFFYLREAKQRNLKISRWK
1Y42 Chain:X ((8-52))
--------------PKYTAKINEAEENWQARAEAIKKGKKQNTWDLFE--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Y42.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7759 for 142 contacts (54.6/contact) +
2D Compatibility (PS) -3950 + (NN) -5163 + (LL) 3960
1D Compatibility (HY) -800 + (ID) 350
Total energy: 1456.0 ( 10.25 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1Y42.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y42-query.scw
PDB file :
Tito_Scwrl_1Y42.pdb
: