Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
4GFD Chain:A ((4-204))
----FITFEGPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEG----MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII----------DQEDLKFHEKVIEGYQEIIH---QRFKSVNADQPLENVVEDTYQTIIKYLEK---
General information:
TITO was launched using:
RESULT:
Template:
4GFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97077 for 1501 contacts (-64.7/contact) +
2D Compatibility (PS) -20185 + (NN) -7653 + (LL) 1152
1D Compatibility (HY) -20400 + (ID) 5150
Total energy: -149313.0 ( -99.48 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_4GFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFD-query.scw
PDB file :
Tito_Scwrl_4GFD.pdb
: