Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADDRDLLIVEENKQEALSAFDICQKKVIEHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGPCGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDIGEMITTA--NG---PAKVVGLNILERVLQVELINREKVIEYTWEELLEEGVVSAQTTD |
2XDP Chain:A ((64-113)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPAEGEVVQVKWPDGKLYGAKYFGSN-IAHMYQVEFEDGS-QIAMKREDIYT---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2XDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6796 for 163 contacts (-41.7/contact) +
2D Compatibility (PS) -4772 + (NN) 1762 + (LL) 16984
1D Compatibility (HY) -2800 + (ID) 650
Total energy: 3728.0 ( 22.87 by residue)
QMean score : 0.320
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