Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLVIDVGNTNTVLGVYHDGKLEYHWRIETSRHKTEDEFGMILRSLFDHSGLMFEQIDGIIISSVVPPIMFALERMCTKYFHIEPQIVGPGMKTGLNIKYD--NPKEVGADRIVNAVAAIHLYGNPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEALYSRAAKLPRIEITRPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAKQEPKVIATGGLAPLIANESDCI--DIVDPFLTLKGLELIYERNRVGSV
3BF3 Chain:A ((4-242))
MYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDELFSHLHPLL---GDAMREIKGIGVASVVPTQNTVIERFSQKYFHISPIWVKA--KNGC-VKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDMGTATTVDLV-VNGSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRIKEVYGDLP-VVLTGGQSKIV---KDMIKHEIFDEDLTIKGV------------
General information:
TITO was launched using:
RESULT:
Template:
3BF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200724 for 1852 contacts (-108.4/contact) +
2D Compatibility (PS) -24954 + (NN) -10353 + (LL) 1036
1D Compatibility (HY) -20000 + (ID) 4950
Total energy: -259945.0 ( -140.36 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_3BF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BF3-query.scw
PDB file :
Tito_Scwrl_3BF3.pdb
: