Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
4F9T Chain:A ((2-229))
-PKHG--YRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTAMGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
4F9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115588 for 1829 contacts (-63.2/contact) +
2D Compatibility (PS) -24780 + (NN) -16851 + (LL) 644
1D Compatibility (HY) -17600 + (ID) 6050
Total energy: -180225.0 ( -98.54 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_4F9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F9T-query.scw
PDB file :
Tito_Scwrl_4F9T.pdb
: