Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFEE---PEVEGG--ILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQSDLFSNVDSAQT----FASILTNPPIRAGKKVV----HAIFEKSAEHLKASGELWIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV
3DMF Chain:A ((178-339))
-------EAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLAR----MGAEVVGVED---DLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3DMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11348 for 1154 contacts (-9.8/contact) +
2D Compatibility (PS) -15501 + (NN) -3519 + (LL) 4384
1D Compatibility (HY) -12800 + (ID) 2600
Total energy: -41384.0 ( -35.86 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_3DMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMF-query.scw
PDB file :
Tito_Scwrl_3DMF.pdb
: