Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA
4WFB Chain:Q ((2-90))
--EARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKPKKKRMGRYQGYTNKRRKAIVTLKEGS--IDLF--
General information:
TITO was launched using:
RESULT:
Template:
4WFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5653 for 567 contacts (-10.0/contact) +
2D Compatibility (PS) -9232 + (NN) 2659 + (LL) 688
1D Compatibility (HY) -10000 + (ID) 2900
Total energy: -24438.0 ( -43.10 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4WFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WFB-query.scw
PDB file :
Tito_Scwrl_4WFB.pdb
: