Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSEPLNLHRLTTESRNSQTVEIHKANTLGILKMINNEDMKVAAAVQEVLPDIKTAVDCAYESFQNGGRLIYTGAGTSGRLGVMDAVECPPTYSVSPDQVIGIMAGGPEAFLQAAEGIEDSEEA--GAED-LRNI--QLTSNDTVIAI-AASGRTPYAAGALRYARKVGAHTIAL---TCNENSAIS-KDADHSIEVVVGPEAI-----TGSTRMKAATAHKMILNMISTAVMVKIGKVYENLMVDVNVSNKKLKERAISIIQSLTNASYDTARYTLEQADHHVKTAIVMLKTSTDQKQAQTLLDEANGFIDKAIEHYHP |
4MSU Chain:A ((322-554)) | -------------------------------------------------PKIATLMKSVSTSLEKKGHVYLVGWQTLGIIAIMDGVECIHTFGADFRDVRGFLI------------------FTFSQEDFLTSILPSLTEIDTVVFIFTLDDNLTEVQTIVEQVKEKTNHIQALAHSTVGQTLPIPLKKLFPSIISITWPLLFFEYEGNFIQKFQRELSTKWVLNTVSTGAHVLLGKILQNHMLDLRISNSKLFWRALAMLQRFSGQSKARCIESLLRAIH-------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MSU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96280 for 1382 contacts (-69.7/contact) +
2D Compatibility (PS) -21501 + (NN) -6370 + (LL) 8084
1D Compatibility (HY) -12400 + (ID) 2850
Total energy: -131317.0 ( -95.02 by residue)
QMean score : 0.476
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