Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVSLSLSSLLTLFFIMLMASGISGLLFLHPRVPLSFVRIHIGILALPLLVSLLILANSGVSGNVGPWHLDSLACLMTFFVLAIGFIIQRFSVRYLMGDRSYRKYFTLFTFTTGAASMTWLSGDLRLMVLFWGATLVGLTLLIRLNSAW----QVASEAAKISGRLFLLSWFSLFFAMMW----LFHATG--QWQLSLVVTNESLAGLGEWERTGIQLLIVLAVIIPAAQWPFQRWLVESI-VAPTPVSAIMHAGLVNAGGIILTRFSPL-FHG-G-IASIILLLLASISVLIGTGISLVQVDYKRQLVGSTIGQMGFMLIQCALG---AYIAAIIHLILHGLFKATLFLQAGSAVGRHEVST-RTNERTSYLWVMAGRILSLVIGVAFWLTAPGDGYHLISALILGWSLSVSWDQLVAFGEGRIGRIAGLTVLGGAALVYFIIHHLFYKWLHTTIFQSVQPPMSAVMIVVCLLLFGSALGTWVARHRSSVFFAVLYLWLVRLGEAKPKSVESHPDYLKQYIS |
| 3RKO Chain:M ((78-375)) | ----------------------------------------------------------------SIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIE--KYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNT--P--MSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMG----------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -273179 for 2331 contacts (-117.2/contact) +
2D Compatibility (PS) -28802 + (NN) -9988 + (LL) 18660
1D Compatibility (HY) -20400 + (ID) 3350
Total energy: -317059.0 ( -136.02 by residue)
QMean score : 0.284
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