Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSANLTDFVTKTIEEMNSFDRENMECIKKLIRKAIDFYHLKSYEEVEETHSGNVRFLHVHSMMEENMLSKMIVVTRNGKTDLDIEGVYEGYVVREY
4NIQ Chain:A ((6-60))
------DFLTKGIE---------------LVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAK--------------------
General information:
TITO was launched using:
RESULT:
Template:
4NIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11592 for 341 contacts (-34.0/contact) +
2D Compatibility (PS) -5683 + (NN) -1182 + (LL) 2568
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -19639.0 ( -57.59 by residue)
QMean score : 0.105
(partial model without unconserved sides chains):
PDB file :
Tito_4NIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NIQ-query.scw
PDB file :
Tito_Scwrl_4NIQ.pdb
: