Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGLVLQLTRAGFLMLLWVFIWSVLRILKTDIYAPTGAVMMRRGLALRGTLLGARQRRHAARYLVVTEGALTGARITLSEQPVLIGRADDSTLVLTDDYASTRHARLSMRGSEWYVEDLGSTNGTYLDRAKVTTAVRVPIGTPVRIGKTAIELRP
4QCJ Chain:A ((42-132))
--------------------------------------------------------LPAGSALLVVKRGPNAGARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYVNREPRNAQV-MQTGDEIQIGK-------
General information:
TITO was launched using:
RESULT:
Template:
4QCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48098 for 626 contacts (-76.8/contact) +
2D Compatibility (PS) -9719 + (NN) -2595 + (LL) 6408
1D Compatibility (HY) -4800 + (ID) 1600
Total energy: -60404.0 ( -96.49 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4QCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QCJ-query.scw
PDB file :
Tito_Scwrl_4QCJ.pdb
: