Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAPHEDPEDHVAPAAQRVRAGTLLLANTDLLEPTFRRSVIYIVEHNDGGTLGVVLNRPSETAVYNVLPQWAKLAAKPK------TMFIGGPVKRDAALCLAVLRVGADPEGVPGLRHVAGRLVMVDLDA-DPEVLAAAVEGVRIYAGYSGWTIGQLEGEIERDDWIVLSALPSDVLVGPRADLWGQVLRRQPLPLSLLATHPIDLSRN
2DO8 Chain:A ((7-167))
---------------------GKFIIATPEMDDEYFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPRIYTQDQMVLNGGPVNQDRGF---IVHSKTDHEFTHSYKVTDDITLTTSGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFETSYLDRW------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83022 for 1045 contacts (-79.4/contact) +
2D Compatibility (PS) -16373 + (NN) -4743 + (LL) 3352
1D Compatibility (HY) -8800 + (ID) 2300
Total energy: -111886.0 ( -107.07 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_2DO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DO8-query.scw
PDB file :
Tito_Scwrl_2DO8.pdb
: