Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFLAGVLCMCAAAASALFGSWSLCHTPTADPTALALRAMAPTQLAAAVM--LAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACH
1NH8 Chain:A ((261-296))
--------------------------PLADPDWVAIRALVPRRDVNGIMDELAAIGAKAILA-------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NH8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12072 for 125 contacts (-96.6/contact) +
2D Compatibility (PS) -3696 + (NN) -3236 + (LL) 6520
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -14834.0 ( -118.67 by residue)
QMean score : -0.211
(partial model without unconserved sides chains):
PDB file :
Tito_1NH8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NH8-query.scw
PDB file :
Tito_Scwrl_1NH8.pdb
: