Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF
3AFQ Chain:A ((2-120))
-AGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTP----------KDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETR----RTVVEVEVDEIGPSLRYATAKVNKA--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52630 for 664 contacts (-79.3/contact) +
2D Compatibility (PS) -11696 + (NN) -7031 + (LL) -408
1D Compatibility (HY) -12000 + (ID) 5050
Total energy: -88815.0 ( -133.76 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_3AFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AFQ-query.scw
PDB file :
Tito_Scwrl_3AFQ.pdb
: