Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYY--GTILTGDQYLHCERTRNRL-HHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4X24 Chain:A ((1-230))
--MKIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHD----ADVTAFGYEIGQMP--------GQPAAFKADEKL-----------MTVAEQALAQLPNTHAVRGLICTGDAFICTAEGQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELL---
General information:
TITO was launched using:
RESULT:
Template:
4X24.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191017 for 2032 contacts (-94.0/contact) +
2D Compatibility (PS) -23938 + (NN) -7249 + (LL) 2148
1D Compatibility (HY) -17200 + (ID) 3800
Total energy: -241056.0 ( -118.63 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_4X24.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X24-query.scw
PDB file :
Tito_Scwrl_4X24.pdb
: