Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEFDPKLR--FAQSPVARLATSTPDGTPHLVPVVFALGARRPAEATGADVIYTAVDAKRKTTQRLRRLANLEHNPRASVLVDSYADDWTQLWWVRADGVAAIHRDGEVMRAAYRLLRAKYAQYQSVPLNGPVIAIAVQRWASWHA
1W9A Chain:A ((6-88))
---FDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKL-------LIQVSIAEPRAKTRNLRR------DPRASILVDA-DDGWS---YAVAEGTAQL-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1W9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33432 for 477 contacts (-70.1/contact) +
2D Compatibility (PS) -9201 + (NN) -5646 + (LL) 5520
1D Compatibility (HY) -5600 + (ID) 1550
Total energy: -49909.0 ( -104.63 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1W9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W9A-query.scw
PDB file :
Tito_Scwrl_1W9A.pdb
: