Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAA---------------DAQAVVTNYHVGGI-LIGSDTDLTIFDGALAEIVAGGGP-LPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYA-QGLRDAGVLPVLKHFPGHGRGSGDSHNG-GVTTPPLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPG---------LTGSE---PASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALW---VTT----KEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
4GYK Chain:A ((31-397)) | ----------------------------------------SA---SKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGE--GTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSN-RELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMG-----FNGVIVTNALN-MKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLK-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GYK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121902 for 2810 contacts (-43.4/contact) +
2D Compatibility (PS) -35594 + (NN) -18066 + (LL) 1396
1D Compatibility (HY) -22000 + (ID) 5800
Total energy: -201966.0 ( -71.87 by residue)
QMean score : 0.421
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