Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVKSA
2LK9 Chain:A ((25-45))
---GIGILVLLIIVILGVPLIIFT--------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5769 for 74 contacts (-78.0/contact) +
2D Compatibility (PS) -1984 + (NN) 577 + (LL) 5764
1D Compatibility (HY) -3600 + (ID) 100
Total energy: -5112.0 ( -69.08 by residue)
QMean score : -0.580
(partial model without unconserved sides chains):
PDB file :
Tito_2LK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LK9-query.scw
PDB file :
Tito_Scwrl_2LK9.pdb
: