Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
4U5A Chain:A ((129-148))
-------AYIYIQKEKIKN--------------
General information:
TITO was launched using:
RESULT:
Template:
4U5A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5726 for 39 contacts (146.8/contact) +
2D Compatibility (PS) -1350 + (NN) -1757 + (LL) 1880
1D Compatibility (HY) -400 + (ID) 100
Total energy: 3999.0 ( 102.54 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4U5A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U5A-query.scw
PDB file :
Tito_Scwrl_4U5A.pdb
: