Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGIGGGYVTSWVGDPGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGKKIFGRAIASAKLA
4V12 Chain:A ((209-343))
-----FDDLKVGEELPVHTARLSRGDLVNYAGVAGDANPLHWDENIAKLAGQPDVIAHGMLTMGLGAGFVSSWSGDPGAITRYAVRLSQPAVVP--AEGTEIEYSGRIKSLDPETRTGVVIVAAKSGGRKIFGLATATIRFS
General information:
TITO was launched using:
RESULT:
Template:
4V12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90773 for 1015 contacts (-89.4/contact) +
2D Compatibility (PS) -14312 + (NN) -2424 + (LL) 576
1D Compatibility (HY) -10000 + (ID) 3550
Total energy: -120483.0 ( -118.70 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_4V12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V12-query.scw
PDB file :
Tito_Scwrl_4V12.pdb
: