Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAW---LYSNFYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTVTPAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
1FMC Chain:A ((9-249))
-LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDM----PMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG-----
General information:
TITO was launched using:
RESULT:
Template:
1FMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164262 for 2051 contacts (-80.1/contact) +
2D Compatibility (PS) -25895 + (NN) -11045 + (LL) 1404
1D Compatibility (HY) -16400 + (ID) 4650
Total energy: -220848.0 ( -107.68 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1FMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FMC-query.scw
PDB file :
Tito_Scwrl_1FMC.pdb
: