Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLD-WRTDL-QDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSD---PVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLI--DVRSPDEFSG-KILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS |
| 1H4K Chain:X ((17-271)) | -------------QARLSAPELILVDLT-SAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPAGGPVALSLHDEPT----ASRDYLLGRLGAADLAIWDARSPQEYRGEKVLA---------AKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKA-LGYPRVKGYAGSWGEWGNHPDTPVEL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1H4K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66516 for 2065 contacts (-32.2/contact) +
2D Compatibility (PS) -27141 + (NN) -20022 + (LL) 2088
1D Compatibility (HY) -14400 + (ID) 4000
Total energy: -129991.0 ( -62.95 by residue)
QMean score : 0.414
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