Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHSVMCDVRHREEVTHLADEAFRLLGHVDVVFSN-AGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANRLYVLPHAASRASIRRRFERIDRTFDEQAAEGWRH
4Y98 Chain:A ((3-265))
--DFQDQVAFITGGASGAGFGQAKVFGQAGAKIVVADVRAEAVEKAVAELEGLGITAHGIVLDIMDREAYARAADEVEAVFGQAPTLLSNTAGVNSFGPIEKTTYDDFDWIIGVNLNGVINGMVTFVPRMIASGRPGHIVTVSSLGGFMGSALAGPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANI--------------------------------HGLEPEKLAEAIKKGVEDNALYIIPYPEVREGLEKHFQAI--------------
General information:
TITO was launched using:
RESULT:
Template:
4Y98.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174951 for 1950 contacts (-89.7/contact) +
2D Compatibility (PS) -24557 + (NN) -6920 + (LL) 2084
1D Compatibility (HY) -15600 + (ID) 3800
Total energy: -223744.0 ( -114.74 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_4Y98.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y98-query.scw
PDB file :
Tito_Scwrl_4Y98.pdb
: