Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQGA
5DU8 Chain:A ((21-263))
MIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGAD----------PDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQGA
General information:
TITO was launched using:
RESULT:
Template:
5DU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141615 for 1883 contacts (-75.2/contact) +
2D Compatibility (PS) -26256 + (NN) -19162 + (LL) 480
1D Compatibility (HY) -28000 + (ID) 11650
Total energy: -226203.0 ( -120.13 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_5DU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DU8-query.scw
PDB file :
Tito_Scwrl_5DU8.pdb
: