Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDA-AVGDYPARVVAVGVDRE-CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
3P9X Chain:A ((4-186))
-------------RVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKL---------------------
General information:
TITO was launched using:
RESULT:
Template:
3P9X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122065 for 1395 contacts (-87.5/contact) +
2D Compatibility (PS) -20565 + (NN) -13083 + (LL) 1948
1D Compatibility (HY) -12800 + (ID) 3350
Total energy: -169915.0 ( -121.80 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_3P9X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P9X-query.scw
PDB file :
Tito_Scwrl_3P9X.pdb
: