Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTDDYLANNVDYASG-------FKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGI----------------RPTWSPESY------PDAVE-------------DVRQSLRRIEVNPFVTK----HTSLRGFVFDVATGKLNEVTP
3VRK Chain:A ((6-210))
---TDALLENNRLYAGGQATHRPGHPGMQPIQPSRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVINEDAIRCLIISHHLLNTHEIILVHHTRCGMLAFTDDLLRAGLEGDAAAEKLIGQATGRAFVSAGKASASPAAFQAFRGPPEPLDAPRSDASTERIAADVRRGLSIILNHPWLPTAGPDAITVRGFIYDVDTGRLEEVS-
General information:
TITO was launched using:
RESULT:
Template:
3VRK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100173 for 1129 contacts (-88.7/contact) +
2D Compatibility (PS) -16860 + (NN) -6385 + (LL) 312
1D Compatibility (HY) -15200 + (ID) 3900
Total energy: -142206.0 ( -125.96 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3VRK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VRK-query.scw
PDB file :
Tito_Scwrl_3VRK.pdb
: