Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTAPGSP
1Z8F Chain:A ((21-204))
------------------AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRCPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG------
General information:
TITO was launched using:
RESULT:
Template:
1Z8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104845 for 1334 contacts (-78.6/contact) +
2D Compatibility (PS) -20620 + (NN) -11288 + (LL) -144
1D Compatibility (HY) -24400 + (ID) 9100
Total energy: -170397.0 ( -127.73 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_1Z8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z8F-query.scw
PDB file :
Tito_Scwrl_1Z8F.pdb
: