Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRHTRFHPIKLAWITAVVAGLMVGVATPADAEPGQWDPTLPALVSAGAPGDPLAVANASLQATAQATQTTLDLGRQFLGGLGINLGGPAASAPSAATTGASRIPRANARQAVEYVIRRAGSQMGVPYSWGGGSLQGPSKGVDSGANTVGFDCSGLVRYAFAGVGVLIPRFSGDQYNAGRHVPPAEAKRGDLIFYGPGGGQHVTLYLGNGQMLEASGSAGKVTVSPVRKAGMTPFVTRIIEY
4Q4G Chain:X ((1004-1210))
----------------------------------LWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDASGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQHVTIYLGNGQMLEAPDVGLKVRVAPVRTAGMTPYVVRYIEY
General information:
TITO was launched using:
RESULT:
Template:
4Q4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87050 for 1801 contacts (-48.3/contact) +
2D Compatibility (PS) -22006 + (NN) -14106 + (LL) 2696
1D Compatibility (HY) -17600 + (ID) 6100
Total energy: -144166.0 ( -80.05 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_4Q4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q4G-query.scw
PDB file :
Tito_Scwrl_4Q4G.pdb
: