Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDRIVMEVSRYRPEIESAPTFQAYEVPLTREWAVLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSMCINCMLCYSACPVYALDPDFLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTLVGECSTACPKGVDPAGAIQRYKLTAATHALKKLLFPWGGG
3P4R Chain:B ((3-242))
-MKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDG-MKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRT-ADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKP----
General information:
TITO was launched using:
RESULT:
Template:
3P4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124238 for 1903 contacts (-65.3/contact) +
2D Compatibility (PS) -24752 + (NN) -7410 + (LL) -432
1D Compatibility (HY) -23600 + (ID) 6050
Total energy: -186482.0 ( -97.99 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_3P4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P4R-query.scw
PDB file :
Tito_Scwrl_3P4R.pdb
: