Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGLSDWELAAARAAIARGLDEDL----RYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTHSVRVLDIGLDM |
1QAP Chain:A ((24-293)) | ------------AAVAQALREDLGGEVDAGNDITA-QLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDD-VRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAVLCGGGANHRLGLTDAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNFNTDQMREAVKRVNGQA---RLEVSGNVTAETLREFAETGVDFISVGALTKHVRALDLSM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131020 for 2113 contacts (-62.0/contact) +
2D Compatibility (PS) -29020 + (NN) -12107 + (LL) 1316
1D Compatibility (HY) -19600 + (ID) 5900
Total energy: -196331.0 ( -92.92 by residue)
QMean score : 0.630
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