Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGAD-AKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN--------AGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
2Z3V Chain:A ((2-136))
---FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEP------VPDYLGEPFFE--------EALRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV---
General information:
TITO was launched using:
RESULT:
Template:
2Z3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67993 for 975 contacts (-69.7/contact) +
2D Compatibility (PS) -13594 + (NN) 310 + (LL) 1332
1D Compatibility (HY) -7200 + (ID) 2250
Total energy: -89395.0 ( -91.69 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_2Z3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z3V-query.scw
PDB file :
Tito_Scwrl_2Z3V.pdb
: